[Example] Using Gemini to Search for Solutions with ZEN Software

Prompt: how to stitch the images in Zen software from zeiss, when the tiled images are located on different places Answer: Zeiss ZEN software is primarily designed to stitch images that were acquired as a tiled scan within the software itself, meaning the metadata contains the precise stage coordinates for each tile. This makes stitching largely automated and highly accurate. When your tiled images are located in different places (e.g., separate files, different folders, or even acquired on different systems without precise stage coordinate metadata), the stitching process becomes more manual or relies on features like ZEN Connect for alignment. Here's a breakdown of how to approach stitching in ZEN software, especially when dealing with images that weren't acquired as a single, contiguous tile scan: 1. Ideal Scenario: Images Acquired as a Tile Scan within ZEN If your "tiled images" are actually individual fields from a ZEN "Tiles" experiment (even if save...